Variant report

Variant	rs10450452
Chromosome Location	chr10:45122678-45122679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1002589	0.81[AFR][1000 genomes]
rs11239177	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1585913	0.98[ASN][1000 genomes]
rs1904836	0.98[ASN][1000 genomes]
rs1904837	0.97[ASN][1000 genomes]
rs7097516	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7100914	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9783143	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs999640	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45115200-45126800	Weak transcription	Aorta	Aorta
2	chr10:45115800-45123000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:45116400-45122800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:45120400-45124200	Weak transcription	HSMMtube	muscle
5	chr10:45120800-45123000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:45120800-45123600	Weak transcription	HSMM	muscle
7	chr10:45121600-45124000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:45121800-45122800	Weak transcription	NHDF-Ad	bronchial
9	chr10:45121800-45124200	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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