Variant report

Variant	rs999640
Chromosome Location	chr10:45123668-45123669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1002589	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1021055	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10450452	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10900074	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10900075	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10900076	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11239137	0.80[EUR][1000 genomes]
rs11239154	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11239156	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11239157	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11239158	0.81[AMR][1000 genomes]
rs11239159	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11239177	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243864	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12244967	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12254041	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12775039	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1585913	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904836	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904837	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1962989	0.85[EUR][1000 genomes]
rs1962991	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1999774	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1999775	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2061970	0.82[AMR][1000 genomes]
rs2061971	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4350324	0.82[AMR][1000 genomes]
rs7082189	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7083920	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7097516	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7100914	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs749000	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs899889	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs899890	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9783143	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs989077	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45115200-45126800	Weak transcription	Aorta	Aorta
2	chr10:45120400-45124200	Weak transcription	HSMMtube	muscle
3	chr10:45121600-45124000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:45121800-45124200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:45122800-45124400	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:45122800-45125800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:45122800-45125800	Enhancers	NHDF-Ad	bronchial
8	chr10:45123000-45123800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:45123000-45123800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:45123000-45124000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:45123000-45125200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:45123000-45125200	Enhancers	Osteobl	bone
13	chr10:45123200-45124400	Enhancers	HMEC	breast
14	chr10:45123400-45124800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr10:45123600-45124000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:45123600-45124200	Enhancers	HSMM	muscle
17	chr10:45123600-45124400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr10:45123600-45124600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:45123600-45124800	Enhancers	NH-A	brain
20	chr10:45123600-45124800	Enhancers	NHLF	lung
21	chr10:45123600-45125200	Enhancers	Adipose Nuclei	Adipose

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