Variant report

Variant	rs12244967
Chromosome Location	chr10:45077687-45077688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1002589	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10047358	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10047389	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10047392	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10047393	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10159760	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10159976	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10160128	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10160186	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1021055	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10793543	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793544	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793545	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10793546	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10793547	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10793548	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10900065	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10900066	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10900067	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10900068	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10900069	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10900070	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10900071	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10900072	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10900073	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10900074	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10900075	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10900076	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11239135	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11239136	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11239137	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11239138	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11239139	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11239141	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11239142	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11239143	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11239144	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11239145	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11239146	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11239147	0.91[EUR][1000 genomes]
rs11239148	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11239149	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11239151	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11239154	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11239156	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11239157	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11239158	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11239159	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11239177	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11599242	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12242558	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12243864	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12254041	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12775039	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1585913	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17408014	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1904836	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1904837	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1962989	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1962991	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1999774	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1999775	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2061970	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2061971	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4350324	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7082189	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083920	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7097516	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7100914	0.85[EUR][1000 genomes]
rs749000	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs899889	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs899890	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9783143	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs989077	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs999640	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1042549	chr10:45071890-45117466	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3432067	chr10:45077663-45077883	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45072200-45081600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:45076400-45078000	Enhancers	Fetal Muscle Leg	muscle
3	chr10:45076800-45078000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:45076800-45078200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:45077000-45078000	Enhancers	Fetal Muscle Trunk	muscle
6	chr10:45077200-45078000	Enhancers	HSMMtube	muscle
7	chr10:45077200-45078000	Enhancers	NHDF-Ad	bronchial
8	chr10:45077400-45077800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:45077600-45078000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr10:45077600-45078000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:45077600-45078000	Flanking Active TSS	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links