Variant report

Variant	rs34212668
Chromosome Location	chr11:105060511-105060512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10502046	0.92[EUR][1000 genomes]
rs10502047	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281540	0.85[EUR][1000 genomes]
rs12416756	0.85[EUR][1000 genomes]
rs12419220	0.82[EUR][1000 genomes]
rs12420524	0.85[EUR][1000 genomes]
rs12420557	0.82[EUR][1000 genomes]
rs12420601	0.82[EUR][1000 genomes]
rs12421544	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421898	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796365	0.92[EUR][1000 genomes]
rs12797298	0.89[EUR][1000 genomes]
rs12797775	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806837	0.82[EUR][1000 genomes]
rs1354322	0.90[EUR][1000 genomes]
rs1503386	0.85[EUR][1000 genomes]
rs1503395	0.92[EUR][1000 genomes]
rs17103773	0.89[EUR][1000 genomes]
rs17103781	0.92[EUR][1000 genomes]
rs17103836	0.92[EUR][1000 genomes]
rs17103858	0.92[EUR][1000 genomes]
rs17103866	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17103873	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17103951	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103953	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376738	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17377910	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17378343	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2047840	0.90[EUR][1000 genomes]
rs2047841	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2062807	0.85[EUR][1000 genomes]
rs2062808	0.85[EUR][1000 genomes]
rs2155817	0.82[EUR][1000 genomes]
rs2409065	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34255114	0.82[EUR][1000 genomes]
rs35120805	0.90[EUR][1000 genomes]
rs35136587	0.82[EUR][1000 genomes]
rs35394521	0.92[EUR][1000 genomes]
rs35560124	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35565964	0.85[EUR][1000 genomes]
rs35743576	0.85[EUR][1000 genomes]
rs4754122	0.92[EUR][1000 genomes]
rs4754123	0.92[EUR][1000 genomes]
rs4754124	0.92[EUR][1000 genomes]
rs4754125	0.90[EUR][1000 genomes]
rs4755076	0.85[EUR][1000 genomes]
rs4755077	0.92[EUR][1000 genomes]
rs4755078	0.92[EUR][1000 genomes]
rs4755079	0.92[EUR][1000 genomes]
rs4755080	0.92[EUR][1000 genomes]
rs4755081	0.90[EUR][1000 genomes]
rs58131087	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60235102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67835723	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7117758	0.92[EUR][1000 genomes]
rs71484390	0.82[EUR][1000 genomes]
rs71484394	0.85[EUR][1000 genomes]
rs71484399	0.92[EUR][1000 genomes]
rs71484400	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71484401	0.92[EUR][1000 genomes]
rs71484402	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7929852	0.85[EUR][1000 genomes]
rs7930712	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv528789	chr11:105014564-105133046	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1045900	chr11:105015999-105138877	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv556220	chr11:105042650-105112018	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv2762942	chr11:105044258-105066898	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv442242	chr11:105049805-105066898	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105055400-105060800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr11:105058800-105063400	Weak transcription	HepG2	liver
3	chr11:105059200-105062000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:105059200-105062000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr11:105060200-105060600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:105060200-105060800	Enhancers	Primary B cells from cord blood	blood
7	chr11:105060400-105060600	Enhancers	Monocytes-CD14+_RO01746	blood

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