Variant report

Variant	rs35136587
Chromosome Location	chr11:104975581-104975582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10502046	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10502047	0.82[EUR][1000 genomes]
rs12281540	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12416756	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12417050	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12417470	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12419220	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12420524	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12420557	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12420601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12421544	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12421898	0.82[EUR][1000 genomes]
rs12787184	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12796365	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12797290	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12797298	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12797775	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12798696	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12800151	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12801987	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12806837	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1354322	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1503386	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1503395	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17103670	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17103773	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17103781	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17103836	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17103858	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17103866	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17103873	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17103951	0.82[EUR][1000 genomes]
rs17103953	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17376738	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17377910	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17378343	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1847301	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2047840	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2047841	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2062807	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2062808	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2155817	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2409065	0.82[EUR][1000 genomes]
rs34105770	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34146979	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34212668	0.82[EUR][1000 genomes]
rs34255114	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34806541	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34819285	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35120805	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35394521	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35560124	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35565964	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35743576	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35995863	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs475266	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4754122	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4754123	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4754124	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4754125	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4755076	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4755077	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4755078	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4755079	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4755080	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4755081	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs481926	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs487128	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs490824	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs492519	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs508149	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs533436	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs535566	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs537014	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs543112	0.90[EUR][1000 genomes]
rs567303	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs571801	0.91[EUR][1000 genomes]
rs573440	0.85[EUR][1000 genomes]
rs58131087	0.82[EUR][1000 genomes]
rs60235102	0.82[EUR][1000 genomes]
rs67835723	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7117758	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71484389	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71484390	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71484391	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71484394	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71484399	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71484400	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71484401	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71484402	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7929852	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7930712	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv3385159	chr11:104786549-105051555	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv2757475	chr11:104895876-104979717	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv2759863	chr11:104895876-104979717	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1042388	chr11:104934347-104988325	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
11	esv2756562	chr11:104937371-104981568	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
12	nsv1040275	chr11:104939029-104988325	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
13	nsv1054109	chr11:104948117-104976058	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
14	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	nsv524985	chr11:104960997-104991640	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
16	esv3425474	chr11:104962498-104978307	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104972200-104980600	Weak transcription	Adipose Nuclei	Adipose
2	chr11:104972400-104977000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:104972400-104977600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr11:104972600-104981000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:104974200-104980000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr11:104974800-104975800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:104975000-104983400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:104975400-104979800	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links