Variant report

Variant	rs34227370
Chromosome Location	chr3:135870283-135870284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:135869858-135870336	HL-60	blood:	n/a	n/a
2	POLR2A	chr3:135870058-135870387	HL-60	blood:	n/a	n/a
3	POLR2A	chr3:135869903-135870412	MCF-7	breast:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:135868191..135870649-chr3:135873014..135875419,2	K562	blood:
2	chr3:135867388..135869019-chr3:135870114..135872076,2	K562	blood:
3	chr3:135866754..135872495-chr3:135912205..135917619,11	MCF-7	breast:
4	chr3:135861871..135867047-chr3:135867816..135873226,7	K562	blood:
5	chr3:135861871..135864342-chr3:135869780..135872731,2	K562	blood:
6	chr3:135870250..135872855-chr3:135914710..135917326,2	K562	blood:
7	chr3:135868668..135870435-chr3:135888609..135890822,2	MCF-7	breast:

No data

Variant related genes	Relation type
TDGF1P6	TF binding region
ENSG00000174579	Chromatin interaction
ENSG00000241438	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs71336047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7650071	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv877518	chr3:135861666-135885554	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135831400-135874800	Weak transcription	Fetal Brain Male	brain
2	chr3:135843800-135873800	Weak transcription	Colonic Mucosa	Colon
3	chr3:135845600-135880400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:135855800-135870800	Weak transcription	Fetal Kidney	kidney
5	chr3:135861600-135873000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:135861800-135870800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:135861800-135872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:135861800-135873000	Weak transcription	Stomach Mucosa	stomach
9	chr3:135862000-135904800	Weak transcription	Hela-S3	cervix
10	chr3:135862600-135871400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:135862600-135872200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:135862600-135872200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:135864200-135872200	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:135864200-135882400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:135864400-135882600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:135864400-135885200	Weak transcription	Brain Germinal Matrix	brain
17	chr3:135865200-135871000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr3:135865200-135871800	Strong transcription	Fetal Thymus	thymus
19	chr3:135865400-135870600	Weak transcription	Small Intestine	intestine
20	chr3:135865600-135882400	Weak transcription	Fetal Heart	heart
21	chr3:135865800-135872200	Strong transcription	Dnd41	blood
22	chr3:135866000-135872000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:135866200-135872000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr3:135866400-135871800	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr3:135866800-135872000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:135867400-135872200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
27	chr3:135867400-135872400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
28	chr3:135867800-135872000	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr3:135867800-135872000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr3:135868000-135871600	Strong transcription	HepG2	liver
31	chr3:135868000-135872000	Strong transcription	Primary B cells from cord blood	blood
32	chr3:135868200-135871600	Strong transcription	Primary hematopoietic stem cells	blood
33	chr3:135868400-135870400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr3:135868400-135870400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr3:135868400-135870600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr3:135868400-135871600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:135868400-135871800	Strong transcription	Primary B cells from peripheral blood	blood
38	chr3:135868400-135871800	Strong transcription	Placenta	Placenta
39	chr3:135868400-135872800	Strong transcription	Thymus	Thymus
40	chr3:135868600-135871000	Weak transcription	Brain Substantia Nigra	brain
41	chr3:135868600-135872000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr3:135868800-135883000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr3:135869000-135871800	Strong transcription	HSMM	muscle
44	chr3:135869000-135872000	Strong transcription	Primary T cells from cord blood	blood
45	chr3:135869000-135876400	Weak transcription	HSMMtube	muscle
46	chr3:135869200-135870800	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr3:135869400-135871000	Strong transcription	Esophagus	oesophagus
48	chr3:135869400-135871400	Genic enhancers	NHEK	skin
49	chr3:135869400-135871800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr3:135869400-135872000	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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