Variant report

Variant	rs34234753
Chromosome Location	chr15:74492326-74492327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74491398..74493100-chr15:74498606..74500534,2	MCF-7	breast:
2	chr15:74478980..74480513-chr15:74491993..74494403,2	MCF-7	breast:
3	chr15:74483852..74487473-chr15:74489633..74493518,4	K562	blood:
4	chr15:74490081..74492588-chr15:74507681..74510665,2	MCF-7	breast:
5	chr15:74481853..74488513-chr15:74489689..74497281,13	MCF-7	breast:
6	chr15:74209119..74211492-chr15:74491566..74493612,2	MCF-7	breast:
7	chr15:74421502..74423343-chr15:74491775..74494417,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137868	Chromatin interaction
ENSG00000248540	Chromatin interaction
ENSG00000259264	Chromatin interaction
ENSG00000140481	Chromatin interaction
ENSG00000167178	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11630924	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11631509	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11633687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639369	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11857410	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12905521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12911581	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12912258	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12915891	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34147822	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34573746	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34591452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35036456	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs351242	0.86[EUR][1000 genomes]
rs35255788	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35917667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62003660	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62003661	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72747610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733163	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs971755	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs971756	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs971757	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv471253	chr15:74489207-74545148	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74466200-74492800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:74469400-74493200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:74470800-74492800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:74485400-74493000	Weak transcription	Fetal Thymus	thymus
5	chr15:74485800-74492600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr15:74487600-74492600	Weak transcription	GM12878-XiMat	blood
7	chr15:74487800-74492600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:74488000-74492600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:74488000-74492800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:74488400-74492600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:74488400-74492800	Weak transcription	Fetal Kidney	kidney
12	chr15:74489200-74492600	Weak transcription	Left Ventricle	heart
13	chr15:74489200-74492600	Weak transcription	Ovary	ovary
14	chr15:74489200-74492600	Weak transcription	Right Ventricle	heart
15	chr15:74489200-74492800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:74489200-74509600	Weak transcription	Gastric	stomach
17	chr15:74489400-74492600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:74489400-74492600	Weak transcription	Fetal Lung	lung
19	chr15:74489400-74492600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr15:74489400-74492600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:74489400-74492600	Weak transcription	Osteobl	bone
22	chr15:74489400-74492800	Weak transcription	Lung	lung
23	chr15:74489400-74492800	Weak transcription	NHLF	lung
24	chr15:74489400-74499000	Weak transcription	Brain Anterior Caudate	brain
25	chr15:74489600-74492600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:74489600-74492600	Weak transcription	Fetal Muscle Leg	muscle
27	chr15:74489600-74492600	Weak transcription	Spleen	Spleen
28	chr15:74489600-74492600	Weak transcription	NHDF-Ad	bronchial
29	chr15:74489800-74492600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:74489800-74492800	Weak transcription	Fetal Heart	heart
31	chr15:74490000-74492600	Weak transcription	HSMM	muscle
32	chr15:74490000-74492800	Weak transcription	HSMMtube	muscle
33	chr15:74490200-74493800	Weak transcription	Colonic Mucosa	Colon
34	chr15:74490400-74492600	Weak transcription	Right Atrium	heart
35	chr15:74490600-74496200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr15:74490800-74492600	Weak transcription	Adipose Nuclei	Adipose
37	chr15:74490800-74493000	Enhancers	NH-A	brain
38	chr15:74491000-74503200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr15:74491200-74492800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr15:74491400-74492600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:74491400-74492600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr15:74491400-74494800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:74491600-74492600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr15:74491600-74492600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr15:74491600-74492600	Weak transcription	Fetal Stomach	stomach
46	chr15:74491600-74492600	Weak transcription	HMEC	breast
47	chr15:74491600-74492800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr15:74491600-74494000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:74491600-74494000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:74491600-74494200	Enhancers	Fetal Intestine Large	intestine

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