Variant report

Variant	rs12911581
Chromosome Location	chr15:74513291-74513292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74503151..74507416-chr15:74511304..74513886,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137868	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11630317	0.81[EUR][1000 genomes]
rs11630924	0.82[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11631509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11631944	0.84[EUR][1000 genomes]
rs11633687	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11639090	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11639369	0.81[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11854957	0.84[EUR][1000 genomes]
rs11857410	0.81[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12899173	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12905521	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12907503	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12912258	0.81[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12912578	0.85[EUR][1000 genomes]
rs12913041	0.85[EUR][1000 genomes]
rs12915891	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13259	0.84[EUR][1000 genomes]
rs2062309	0.82[EUR][1000 genomes]
rs2415169	0.84[EUR][1000 genomes]
rs2899824	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34004794	0.81[AMR][1000 genomes]
rs34147822	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34234753	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34573746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34591452	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34868798	0.84[EUR][1000 genomes]
rs34985083	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35036456	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35255788	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35462746	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35661273	0.84[EUR][1000 genomes]
rs35917667	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3848160	0.84[EUR][1000 genomes]
rs3848161	0.84[EUR][1000 genomes]
rs3888004	0.84[EUR][1000 genomes]
rs409856	0.84[EUR][1000 genomes]
rs62003660	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62003661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62005707	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62005709	0.84[EUR][1000 genomes]
rs62005710	0.84[EUR][1000 genomes]
rs62005711	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71399778	0.84[EUR][1000 genomes]
rs72747610	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs733163	0.81[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8037531	0.83[EUR][1000 genomes]
rs923118	0.84[EUR][1000 genomes]
rs9630417	0.82[EUR][1000 genomes]
rs971755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs971756	0.81[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs971757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv471253	chr15:74489207-74545148	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv904349	chr15:74500105-74542686	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv904350	chr15:74500105-74548773	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74506600-74520400	Weak transcription	Left Ventricle	heart
2	chr15:74506800-74513800	Weak transcription	Fetal Heart	heart
3	chr15:74507000-74514000	Weak transcription	Right Atrium	heart
4	chr15:74510600-74513600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr15:74511000-74513800	Weak transcription	Hela-S3	cervix
6	chr15:74512200-74515200	Enhancers	Fetal Brain Female	brain
7	chr15:74512200-74515400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:74512200-74516600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:74512200-74518800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:74512200-74522600	Enhancers	Fetal Brain Male	brain
11	chr15:74512400-74514400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
12	chr15:74512400-74515200	Enhancers	Brain Germinal Matrix	brain
13	chr15:74512400-74517800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:74512400-74517800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:74512400-74518800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr15:74512600-74514200	Enhancers	Fetal Kidney	kidney
17	chr15:74512600-74514400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:74512600-74515000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
19	chr15:74512600-74515600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
20	chr15:74512600-74516800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr15:74512600-74517600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
22	chr15:74512600-74517600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:74512600-74517800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:74512800-74514200	Enhancers	Fetal Stomach	stomach
25	chr15:74512800-74514400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
26	chr15:74512800-74514600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
27	chr15:74512800-74514800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
28	chr15:74512800-74518600	Enhancers	Fetal Thymus	thymus
29	chr15:74513000-74515200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
30	chr15:74513000-74515400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
31	chr15:74513000-74517000	Bivalent Enhancer	Fetal Muscle Leg	muscle
32	chr15:74513000-74517400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:74513200-74514000	Weak transcription	Fetal Lung	lung
34	chr15:74513200-74515200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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