Variant report

Variant	rs34985083
Chromosome Location	chr15:74518056-74518057
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74516668..74519200-chr15:74524275..74526738,2	MCF-7	breast:
2	chr15:74513953..74515786-chr15:74517220..74519970,2	K562	blood:
3	chr15:74514536..74518272-chr15:74526056..74529692,3	MCF-7	breast:
4	chr15:74516266..74518836-chr15:74583231..74585495,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140481	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11630924	0.81[AMR][1000 genomes]
rs11631509	0.81[AMR][1000 genomes]
rs11639369	0.81[AMR][1000 genomes]
rs12911581	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12912258	0.81[AMR][1000 genomes]
rs34004794	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34147822	0.81[AMR][1000 genomes]
rs34573746	0.81[AMR][1000 genomes]
rs62003660	0.81[AMR][1000 genomes]
rs62003661	0.81[AMR][1000 genomes]
rs733163	0.81[AMR][1000 genomes]
rs971755	0.81[AMR][1000 genomes]
rs971756	0.81[AMR][1000 genomes]
rs971757	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv471253	chr15:74489207-74545148	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv904349	chr15:74500105-74542686	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv904350	chr15:74500105-74548773	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74506600-74520400	Weak transcription	Left Ventricle	heart
2	chr15:74512200-74518800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:74512200-74522600	Enhancers	Fetal Brain Male	brain
4	chr15:74512400-74518800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr15:74512800-74518600	Enhancers	Fetal Thymus	thymus
6	chr15:74514600-74518400	Enhancers	Fetal Stomach	stomach
7	chr15:74515400-74518200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:74515400-74522400	Enhancers	Fetal Brain Female	brain
9	chr15:74515800-74518400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:74516400-74520400	Weak transcription	Brain Anterior Caudate	brain
11	chr15:74516600-74518600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:74516800-74518400	Enhancers	Placenta	Placenta
13	chr15:74517000-74519800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr15:74517000-74520400	Weak transcription	Fetal Lung	lung
15	chr15:74517400-74518800	Enhancers	Brain Germinal Matrix	brain
16	chr15:74517400-74520200	Weak transcription	Fetal Heart	heart
17	chr15:74517400-74520800	Weak transcription	NH-A	brain
18	chr15:74517600-74520400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:74517600-74520400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:74517800-74518200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:74517800-74518400	Enhancers	Spleen	Spleen
22	chr15:74517800-74518800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
23	chr15:74518000-74518400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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