Variant report

Variant	rs34237921
Chromosome Location	chr2:173374433-173374434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DLX2-4	chr2:173374331-173374541	ENSG00000225205.1

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10174809	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12465442	0.80[ASN][1000 genomes]
rs4972841	0.85[ASN][1000 genomes]
rs7560501	0.80[ASN][1000 genomes]
rs7562753	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562865	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173347800-173376200	Weak transcription	Fetal Heart	heart
2	chr2:173356400-173379200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:173356600-173375400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:173356800-173374600	Weak transcription	Fetal Kidney	kidney
5	chr2:173356800-173376000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:173356800-173376200	Weak transcription	Brain Substantia Nigra	brain
7	chr2:173357000-173376000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:173357000-173376000	Weak transcription	Aorta	Aorta
9	chr2:173357200-173376600	Weak transcription	Right Ventricle	heart
10	chr2:173357600-173376200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:173358000-173376200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:173361000-173375600	Weak transcription	Spleen	Spleen
13	chr2:173361200-173375200	Weak transcription	GM12878-XiMat	blood
14	chr2:173367400-173376000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr2:173369600-173374800	Weak transcription	HepG2	liver
16	chr2:173369600-173375000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr2:173369600-173375400	Weak transcription	Left Ventricle	heart
18	chr2:173369600-173375600	Weak transcription	Liver	Liver
19	chr2:173369600-173376000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr2:173369600-173376000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr2:173369600-173376000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:173369600-173376000	Weak transcription	Esophagus	oesophagus
23	chr2:173369600-173376000	Weak transcription	HUVEC	blood vessel
24	chr2:173369800-173375600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr2:173369800-173375600	Weak transcription	Adipose Nuclei	Adipose
26	chr2:173369800-173376600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr2:173370000-173375000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr2:173370200-173375000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr2:173370200-173375400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr2:173370200-173375600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr2:173370400-173374800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr2:173370400-173375400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr2:173370400-173375600	Weak transcription	Brain Anterior Caudate	brain
34	chr2:173371200-173374600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr2:173371400-173375800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr2:173372200-173375400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr2:173372200-173375600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr2:173372400-173377000	Weak transcription	Thymus	Thymus
39	chr2:173372600-173379600	Enhancers	Primary B cells from peripheral blood	blood
40	chr2:173373000-173374600	Enhancers	Primary B cells from cord blood	blood
41	chr2:173373000-173375400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr2:173373200-173375200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr2:173373200-173375800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr2:173373200-173376200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr2:173373200-173376200	Weak transcription	NHEK	skin
46	chr2:173373200-173376400	Weak transcription	Fetal Thymus	thymus
47	chr2:173373400-173375000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr2:173373400-173375200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr2:173373400-173375800	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr2:173373400-173375800	Weak transcription	Pancreas	Pancrea

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