Variant report
| Variant | rs7560501 |
|---|---|
| Chromosome Location | chr2:173407281-173407282 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10193201 | 0.85[EUR][1000 genomes] |
| rs10460364 | 0.88[EUR][1000 genomes] |
| rs1319059 | 0.80[EUR][1000 genomes] |
| rs17664 | 0.82[EUR][1000 genomes] |
| rs2357634 | 0.81[EUR][1000 genomes] |
| rs2357635 | 0.81[EUR][1000 genomes] |
| rs2737086 | 0.80[EUR][1000 genomes] |
| rs34237921 | 0.80[ASN][1000 genomes] |
| rs35968313 | 0.88[EUR][1000 genomes] |
| rs4246629 | 0.85[EUR][1000 genomes] |
| rs4972834 | 0.83[EUR][1000 genomes] |
| rs4972835 | 0.84[EUR][1000 genomes] |
| rs4972841 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs5015856 | 0.81[EUR][1000 genomes] |
| rs55978548 | 0.87[EUR][1000 genomes] |
| rs62167825 | 0.88[EUR][1000 genomes] |
| rs6710725 | 0.87[EUR][1000 genomes] |
| rs6715425 | 0.87[EUR][1000 genomes] |
| rs6730905 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6749369 | 0.86[EUR][1000 genomes] |
| rs6759316 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6759557 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7562753 | 0.80[ASN][1000 genomes] |
| rs7562865 | 0.80[ASN][1000 genomes] |
| rs7570417 | 0.81[EUR][1000 genomes] |
| rs7575064 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533927 | chr2:173161637-173796894 | Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
| 2 | esv2760591 | chr2:173396905-173719520 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:173392600-173419600 | Weak transcription | Primary T cells effector/memory enriched fromperipheralblood | blood |
| 2 | chr2:173399600-173414400 | Weak transcription | Placenta Amnion | Placenta Amnion |
