Variant report

Variant	rs34241991
Chromosome Location	chr1:197355817-197355818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10754222	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10801604	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10922215	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10922221	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10922223	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10922225	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12083773	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2476020	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2759655	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2759662	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2759665	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2821102	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2821108	0.96[EUR][1000 genomes]
rs35367258	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66619347	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7522325	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197354400-197366000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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