Variant report

Variant	rs10922225
Chromosome Location	chr1:197392891-197392892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10754222	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10801604	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10801605	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.87[YRI][hapmap]
rs10922213	0.83[CEU][hapmap]
rs10922215	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10922216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10922221	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10922223	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11583319	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs11799515	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs11802794	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs12083773	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12128912	1.00[CEU][hapmap]
rs12141028	0.84[CHB][hapmap]
rs12142127	0.81[CEU][hapmap]
rs17621130	0.85[JPT][hapmap]
rs2476020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2494268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2494271	1.00[CEU][hapmap]
rs2759655	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2759662	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2759663	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2759665	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2821102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2821108	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2821121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34241991	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35367258	0.89[EUR][1000 genomes]
rs66619347	0.86[EUR][1000 genomes]
rs7522325	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197388800-197407000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:197388800-197407000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:197389400-197393400	Weak transcription	Brain Anterior Caudate	brain
4	chr1:197389600-197405800	Weak transcription	Brain Germinal Matrix	brain
5	chr1:197391200-197393400	Weak transcription	Fetal Brain Female	brain
6	chr1:197391600-197393000	Enhancers	Hela-S3	cervix
7	chr1:197391600-197398400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:197392000-197393000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:197392800-197393600	Enhancers	Ovary	ovary
10	chr1:197392800-197394200	Enhancers	Fetal Lung	lung

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