Variant report

Variant	rs10922213
Chromosome Location	chr1:197352266-197352267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10754222	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10801604	0.94[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10801605	0.83[CEU][hapmap]
rs10922215	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs10922216	0.83[CEU][hapmap]
rs10922221	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs10922223	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs10922225	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs11799515	0.94[CEU][hapmap]
rs11802794	0.94[CEU][hapmap]
rs12083773	0.94[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12128912	0.94[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2476020	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs2494268	0.83[CEU][hapmap]
rs2494271	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2759655	0.91[EUR][1000 genomes]
rs2759662	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs2759665	0.87[EUR][1000 genomes]
rs2821102	0.83[CEU][hapmap];0.91[EUR][1000 genomes]
rs2821108	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2821121	0.94[CEU][hapmap]
rs34241991	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35367258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4262574	0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs66619347	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72740550	0.82[ASN][1000 genomes]
rs7522325	0.82[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links