Variant report
| Variant | rs4262574 |
|---|---|
| Chromosome Location | chr1:197349193-197349194 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:197338322..197340480-chr1:197348000..197349900,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10754222 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10801604 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10922213 | 0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap] |
| rs10922215 | 0.92[EUR][1000 genomes] |
| rs10922221 | 0.90[EUR][1000 genomes] |
| rs10922223 | 0.90[EUR][1000 genomes] |
| rs10922225 | 0.89[EUR][1000 genomes] |
| rs12083773 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12128912 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2476020 | 0.92[EUR][1000 genomes] |
| rs2494271 | 0.88[CHB][hapmap];0.81[JPT][hapmap] |
| rs2759655 | 0.92[EUR][1000 genomes] |
| rs2759662 | 0.91[EUR][1000 genomes] |
| rs2759665 | 0.88[EUR][1000 genomes] |
| rs2821102 | 0.92[EUR][1000 genomes] |
| rs2821108 | 0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs34241991 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs35367258 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66619347 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs72740550 | 0.95[ASN][1000 genomes] |
| rs7522325 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv528460 | chr1:196542567-197446702 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014039 | chr1:197311285-197529212 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
