Variant report
| Variant | rs2759663 |
|---|---|
| Chromosome Location | chr1:197384426-197384427 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10801605 | 0.88[CHB][hapmap];0.87[JPT][hapmap] |
| rs10922215 | 0.93[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs10922216 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10922221 | 0.88[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs10922223 | 1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10922225 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11583319 | 0.88[JPT][hapmap] |
| rs11799515 | 0.93[CHB][hapmap];0.88[JPT][hapmap] |
| rs11802794 | 0.93[CHB][hapmap];0.88[JPT][hapmap] |
| rs17621130 | 0.87[JPT][hapmap] |
| rs2476020 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2494268 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2759655 | 0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2759662 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs2759665 | 0.90[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2821102 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs2821121 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs34241991 | 0.83[ASN][1000 genomes] |
| rs72740550 | 0.82[EUR][1000 genomes] |
| rs7522325 | 0.88[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv528460 | chr1:196542567-197446702 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014039 | chr1:197311285-197529212 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2759663 | DENND1B | cis | uninvolved skin | skin_eQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
