Variant report

Variant	rs34247233
Chromosome Location	chr15:56104220-56104221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1104845	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1104848	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12907101	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17819216	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17819222	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17819228	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34146683	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34685895	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34755247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35299498	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35472570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35734155	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35941636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36132540	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7182185	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72732242	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8033157	0.95[AMR][1000 genomes]
rs933997	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833017	chr15:55965957-56157912	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv3366380	chr15:56003224-56141650	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56095800-56128600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:56104200-56105800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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