Variant report

Variant	rs933997
Chromosome Location	chr15:56111324-56111325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1104845	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1104848	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12899701	0.88[EUR][1000 genomes]
rs12906245	0.90[EUR][1000 genomes]
rs12906350	0.90[EUR][1000 genomes]
rs12907101	0.87[AMR][1000 genomes]
rs12908286	0.85[EUR][1000 genomes]
rs12908466	0.88[EUR][1000 genomes]
rs12911101	0.85[EUR][1000 genomes]
rs12913220	0.90[EUR][1000 genomes]
rs17819216	0.90[CEU][hapmap];0.87[AMR][1000 genomes]
rs17819222	0.90[CEU][hapmap];0.87[AMR][1000 genomes]
rs17819228	0.90[CEU][hapmap];0.87[AMR][1000 genomes]
rs2899593	0.88[EUR][1000 genomes]
rs34146683	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34247233	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34333169	0.85[EUR][1000 genomes]
rs34685895	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34755247	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35299498	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35313340	0.85[EUR][1000 genomes]
rs35472570	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35734155	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35759462	0.90[EUR][1000 genomes]
rs35941636	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7182185	0.81[CEU][hapmap];0.87[AMR][1000 genomes]
rs7183906	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs72732242	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8033157	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833017	chr15:55965957-56157912	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv3366380	chr15:56003224-56141650	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56095800-56128600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:56106000-56131200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:56110800-56112200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:56111000-56112000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:56111000-56112200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:56111000-56115000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:56111000-56115200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:56111000-56115200	Weak transcription	Osteobl	bone
9	chr15:56111200-56112000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:56111200-56112600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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