Variant report

Variant	rs34259102
Chromosome Location	chr2:179726234-179726235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1027138	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11893004	0.86[ASN][1000 genomes]
rs12467323	0.82[AFR][1000 genomes]
rs12476741	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12477346	0.87[ASN][1000 genomes]
rs13004438	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17362581	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62177296	0.87[ASN][1000 genomes]
rs6709708	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6709734	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6731864	0.90[ASN][1000 genomes]
rs883894	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv949133	chr2:179711376-180124327	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179695800-179738400	Weak transcription	Fetal Intestine Large	intestine
2	chr2:179696400-179728800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr2:179702200-179749200	Weak transcription	Thymus	Thymus
4	chr2:179702400-179729200	Weak transcription	Lung	lung
5	chr2:179702400-179730000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr2:179702800-179728600	Weak transcription	Pancreas	Pancrea
7	chr2:179708000-179727800	Weak transcription	Psoas Muscle	Psoas
8	chr2:179710800-179782800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr2:179711600-179728000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr2:179711600-179728400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:179712000-179727000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr2:179713400-179729200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr2:179713400-179778600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr2:179717000-179790600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr2:179718200-179728600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr2:179718200-179728800	Weak transcription	Primary B cells from cord blood	blood
17	chr2:179718400-179728400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr2:179720200-179728000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:179720800-179726400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr2:179721000-179727800	Weak transcription	Primary T cells from cord blood	blood
21	chr2:179722400-179728800	Weak transcription	Aorta	Aorta
22	chr2:179724200-179727800	Weak transcription	NHDF-Ad	bronchial
23	chr2:179724200-179729600	Weak transcription	Brain Substantia Nigra	brain
24	chr2:179724200-179730400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr2:179724400-179726800	Enhancers	Fetal Muscle Leg	muscle
26	chr2:179724400-179728600	Weak transcription	Ovary	ovary
27	chr2:179724600-179728000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr2:179724600-179733400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr2:179724800-179726400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr2:179724800-179727600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:179724800-179727800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr2:179724800-179727800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr2:179724800-179728000	Weak transcription	Brain Germinal Matrix	brain
34	chr2:179724800-179728600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr2:179724800-179728600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr2:179724800-179729000	Weak transcription	Brain Anterior Caudate	brain
37	chr2:179724800-179730000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr2:179724800-179732800	Weak transcription	Brain Angular Gyrus	brain
39	chr2:179725600-179727200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr2:179725600-179727800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr2:179725600-179727800	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr2:179725600-179727800	Weak transcription	HSMMtube	muscle
43	chr2:179725800-179726800	Enhancers	Left Ventricle	heart
44	chr2:179725800-179727600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr2:179725800-179727800	Enhancers	Fetal Heart	heart
46	chr2:179725800-179729200	Weak transcription	Brain Hippocampus Middle	brain
47	chr2:179726000-179726400	Enhancers	Fetal Muscle Trunk	muscle
48	chr2:179726000-179727800	Weak transcription	Fetal Lung	lung
49	chr2:179726000-179727800	Weak transcription	HSMM	muscle
50	chr2:179726000-179728200	Weak transcription	Colon Smooth Muscle	Colon

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