Variant report
| Variant | rs34262487 |
|---|---|
| Chromosome Location | chr6:36224315-36224316 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000246982 | Chromatin interaction |
| ENSG00000096070 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10947591 | 1.00[ASN][1000 genomes] |
| rs12197499 | 1.00[ASN][1000 genomes] |
| rs13196184 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2032506 | 1.00[ASN][1000 genomes] |
| rs2301422 | 1.00[ASN][1000 genomes] |
| rs4236048 | 1.00[ASN][1000 genomes] |
| rs6457892 | 1.00[ASN][1000 genomes] |
| rs6457894 | 1.00[ASN][1000 genomes] |
| rs71569325 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7747793 | 1.00[ASN][1000 genomes] |
| rs7773924 | 1.00[ASN][1000 genomes] |
| rs7775197 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9296177 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428481 | chr6:36219000-36365746 | Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
