Variant report

Variant	rs10947591
Chromosome Location	chr6:36157192-36157193
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36140986..36143534-chr6:36156572..36159482,2	K562	blood:
2	chr6:36138949..36143534-chr6:36154662..36159482,4	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10807157	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs12196677	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12197499	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13196184	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17356524	1.00[JPT][hapmap]
rs2032506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2234075	1.00[CHB][hapmap]
rs2301422	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815808	1.00[YRI][hapmap]
rs34262487	1.00[ASN][1000 genomes]
rs4236048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711434	1.00[YRI][hapmap]
rs6457883	1.00[YRI][hapmap]
rs6457884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs6457892	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906612	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs6927278	1.00[YRI][hapmap]
rs71569325	1.00[ASN][1000 genomes]
rs7747793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773924	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366900	0.84[EUR][1000 genomes]
rs9470228	0.93[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10947591	RP1-179N16.6	cis	Thyroid	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36146000-36163400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:36149000-36163600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:36152600-36163600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:36155600-36163400	Weak transcription	Primary T cells from cord blood	blood
5	chr6:36155600-36163400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:36155800-36163600	Weak transcription	Psoas Muscle	Psoas
7	chr6:36156000-36157600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:36156000-36163400	Weak transcription	Fetal Intestine Small	intestine

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