Variant report

Variant	rs6906612
Chromosome Location	chr6:36151177-36151178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10807157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947591	0.84[EUR][1000 genomes]
rs2032506	0.93[CEU][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs2301422	0.83[EUR][1000 genomes]
rs4236048	0.93[CEU][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs61435713	0.82[AFR][1000 genomes]
rs6457884	0.93[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457892	0.87[CEU][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs6457894	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs7747793	0.93[CEU][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs7754042	0.94[LWK][hapmap];0.86[YRI][hapmap]
rs7773924	0.84[EUR][1000 genomes]
rs7775197	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs9296177	0.93[CEU][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs9366900	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470224	1.00[ASW][hapmap];0.88[LWK][hapmap];0.96[MKK][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs9470228	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs6906612	RP1-179N16.6	cis	Nerve Tibial	GTEx
rs6906612	BAK1	cis	cerebellum	SCAN
rs6906612	RP1-179N16.6	cis	Adipose Subcutaneous	GTEx
rs6906612	RP1-179N16.6	cis	Stomach	GTEx
rs6906612	TMEM217	cis	cerebellum	SCAN
rs6906612	PNPLA1	cis	parietal	SCAN
rs6906612	RP1-179N16.6	cis	Artery Tibial	GTEx
rs6906612	MAPK13	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36146000-36154000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:36146000-36163400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:36147400-36155400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:36149000-36163600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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