Variant report

Variant	rs6927278
Chromosome Location	chr6:36144361-36144362
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12191295	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252430	0.90[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815808	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815810	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236048	1.00[YRI][hapmap]
rs4711434	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457880	0.91[EUR][1000 genomes]
rs6457883	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457894	1.00[YRI][hapmap]
rs7745457	1.00[ASN][1000 genomes]
rs9470224	0.90[CEU][hapmap]
rs9470260	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36110000-36145000	Weak transcription	Primary T cells from cord blood	blood
2	chr6:36118600-36145800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:36128400-36145800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:36128600-36149800	Weak transcription	Ovary	ovary
5	chr6:36137200-36145600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:36137600-36145600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:36138000-36145000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:36139600-36144600	Weak transcription	GM12878-XiMat	blood
9	chr6:36140000-36144400	Weak transcription	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links