Variant report

Variant	rs6457880
Chromosome Location	chr6:36096759-36096760
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr6:36096551-36096975	GM12878	blood:	n/a	chr6:36096744-36096753 chr6:36096744-36096753

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36096617..36099142-chr6:36162886..36164936,2	MCF-7	breast:

Variant related genes	Relation type
MAPK13	TF binding region
ENSG00000096070	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10080826	1.00[JPT][hapmap]
rs12110812	1.00[JPT][hapmap]
rs12191295	0.93[EUR][1000 genomes]
rs2252430	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs2815808	1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2815810	0.91[EUR][1000 genomes]
rs2859130	0.95[EUR][1000 genomes]
rs4711434	0.86[EUR][1000 genomes]
rs6457883	0.91[EUR][1000 genomes]
rs6927278	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36084600-36097600	Weak transcription	Fetal Heart	heart
2	chr6:36086600-36098000	Weak transcription	Aorta	Aorta
3	chr6:36088800-36096800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:36089000-36097800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:36089200-36097600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:36089400-36097800	Enhancers	Primary T cells fromperipheralblood	blood
7	chr6:36089600-36097800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:36091800-36096800	Weak transcription	GM12878-XiMat	blood
9	chr6:36091800-36097800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:36091800-36097800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:36091800-36097800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:36091800-36097800	Weak transcription	Right Atrium	heart
13	chr6:36091800-36098000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:36092200-36097600	Weak transcription	Pancreas	Pancrea
15	chr6:36092200-36097600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:36092200-36097800	Weak transcription	Liver	Liver
17	chr6:36092400-36097600	Weak transcription	Colonic Mucosa	Colon
18	chr6:36093400-36097600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr6:36093800-36096800	Enhancers	HUVEC	blood vessel
20	chr6:36093800-36097000	Enhancers	Lung	lung
21	chr6:36093800-36097800	Enhancers	NHDF-Ad	bronchial
22	chr6:36094400-36096800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:36094400-36097600	Enhancers	Fetal Intestine Small	intestine
24	chr6:36094600-36096800	Flanking Active TSS	HepG2	liver
25	chr6:36094800-36097000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr6:36094800-36097400	Weak transcription	Thymus	Thymus
27	chr6:36094800-36097600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:36094800-36097600	Enhancers	Fetal Intestine Large	intestine
29	chr6:36095000-36097400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:36095000-36097600	Weak transcription	Primary T cells from cord blood	blood
31	chr6:36095000-36097600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:36095000-36098000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:36095200-36097400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr6:36095200-36097600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:36095400-36097400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:36095400-36097600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr6:36095400-36097600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:36095400-36097600	Weak transcription	NHEK	skin
39	chr6:36095400-36097800	Weak transcription	Small Intestine	intestine
40	chr6:36095600-36096800	Enhancers	Esophagus	oesophagus
41	chr6:36095600-36097600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:36095600-36097600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:36095600-36097600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:36095600-36099000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:36095800-36096800	Weak transcription	Primary B cells from cord blood	blood
46	chr6:36095800-36096800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:36095800-36096800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:36095800-36097200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:36095800-36097600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:36095800-36097600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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