Variant report

Variant	rs34278620
Chromosome Location	chr15:59324390-59324391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1044673	0.84[AMR][1000 genomes]
rs72746807	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv520679	chr15:59268410-59376531	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv510663	chr15:59310676-59370041	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59280800-59327800	Weak transcription	Small Intestine	intestine
2	chr15:59281200-59352600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:59281400-59347800	Weak transcription	Colonic Mucosa	Colon
4	chr15:59281800-59352200	Weak transcription	Aorta	Aorta
5	chr15:59281800-59353400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:59283800-59329000	Weak transcription	Pancreas	Pancrea
7	chr15:59283800-59344800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:59283800-59359000	Weak transcription	Fetal Brain Male	brain
9	chr15:59285000-59328000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:59288400-59351200	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:59295200-59349200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr15:59295600-59335400	Weak transcription	Lung	lung
13	chr15:59300000-59324600	Weak transcription	Right Ventricle	heart
14	chr15:59301200-59335400	Weak transcription	HUVEC	blood vessel
15	chr15:59305400-59354400	Weak transcription	Gastric	stomach
16	chr15:59306000-59353400	Weak transcription	Fetal Heart	heart
17	chr15:59308400-59358000	Weak transcription	Spleen	Spleen
18	chr15:59309200-59336600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:59309200-59359000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:59313600-59328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:59315200-59325000	Weak transcription	HSMM	muscle
22	chr15:59317600-59331400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:59319600-59331800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr15:59321400-59324800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr15:59321400-59336800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr15:59321600-59324600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr15:59321600-59336200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr15:59322400-59325000	Weak transcription	Colon Smooth Muscle	Colon
29	chr15:59322600-59325400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr15:59322800-59325200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr15:59322800-59325400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:59322800-59326800	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr15:59322800-59327200	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr15:59323000-59324600	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr15:59323000-59324800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:59323000-59324800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:59323000-59324800	Strong transcription	Left Ventricle	heart
38	chr15:59323000-59325000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:59323000-59325000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:59323000-59325000	Strong transcription	Fetal Intestine Small	intestine
41	chr15:59323000-59325000	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr15:59323000-59325200	Strong transcription	NHDF-Ad	bronchial
43	chr15:59323000-59325400	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr15:59323000-59325400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:59323000-59325400	Strong transcription	Fetal Lung	lung
46	chr15:59323000-59325600	Strong transcription	Liver	Liver
47	chr15:59323000-59325600	Strong transcription	Fetal Muscle Trunk	muscle
48	chr15:59323000-59325800	Strong transcription	Duodenum Mucosa	Duodenum
49	chr15:59323000-59325800	Strong transcription	Fetal Muscle Leg	muscle
50	chr15:59323000-59325800	Strong transcription	Fetal Thymus	thymus

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