Variant report

Variant	rs72746807
Chromosome Location	chr15:59311162-59311163
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59291895..59294117-chr15:59308737..59311639,2	K562	blood:
2	chr15:59278775..59282912-chr15:59307772..59312009,5	K562	blood:
3	chr15:59306289..59309099-chr15:59310666..59312444,2	K562	blood:
4	chr15:59304279..59306726-chr15:59309457..59311278,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157450	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1044673	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11856887	0.90[AMR][1000 genomes]
rs34278620	0.81[AMR][1000 genomes]
rs73414883	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv520679	chr15:59268410-59376531	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv510663	chr15:59310676-59370041	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59280800-59327800	Weak transcription	Small Intestine	intestine
2	chr15:59281200-59352600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:59281400-59323200	Weak transcription	Ovary	ovary
4	chr15:59281400-59347800	Weak transcription	Colonic Mucosa	Colon
5	chr15:59281800-59352200	Weak transcription	Aorta	Aorta
6	chr15:59281800-59353400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:59282000-59323000	Weak transcription	Fetal Lung	lung
8	chr15:59282000-59323200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr15:59282000-59323200	Weak transcription	Fetal Kidney	kidney
10	chr15:59282400-59323200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr15:59282400-59323400	Weak transcription	NHLF	lung
12	chr15:59283800-59313400	Weak transcription	Right Atrium	heart
13	chr15:59283800-59329000	Weak transcription	Pancreas	Pancrea
14	chr15:59283800-59344800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr15:59283800-59359000	Weak transcription	Fetal Brain Male	brain
16	chr15:59284600-59323000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:59284800-59323000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:59285000-59323000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:59285000-59328000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:59285200-59323000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr15:59285200-59323000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:59287400-59319000	Weak transcription	Brain Germinal Matrix	brain
23	chr15:59288400-59351200	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:59292200-59321600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr15:59293400-59311600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr15:59293800-59317000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr15:59295200-59349200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr15:59295600-59323000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:59295600-59335400	Weak transcription	Lung	lung
30	chr15:59295800-59323200	Weak transcription	Thymus	Thymus
31	chr15:59297600-59314200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:59297600-59314600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr15:59297800-59314600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr15:59297800-59323200	Weak transcription	HepG2	liver
35	chr15:59297800-59323200	Weak transcription	NH-A	brain
36	chr15:59298000-59317000	Weak transcription	Osteobl	bone
37	chr15:59298400-59323000	Weak transcription	NHDF-Ad	bronchial
38	chr15:59298600-59313200	Weak transcription	Fetal Intestine Large	intestine
39	chr15:59298600-59323000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr15:59298600-59323000	Weak transcription	NHEK	skin
41	chr15:59298600-59323200	Weak transcription	Adipose Nuclei	Adipose
42	chr15:59298800-59312400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:59298800-59313800	Weak transcription	HSMM	muscle
44	chr15:59298800-59314400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:59298800-59323000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr15:59298800-59323200	Weak transcription	HMEC	breast
47	chr15:59299000-59314400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr15:59299000-59314600	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr15:59300000-59323000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr15:59300000-59324600	Weak transcription	Right Ventricle	heart

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