Variant report

Variant	rs34282295
Chromosome Location	chr4:47339630-47339631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10440176	0.82[EUR][1000 genomes]
rs11737184	0.82[EUR][1000 genomes]
rs13114985	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17461709	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35276546	0.82[ASN][1000 genomes]
rs4235146	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4495018	0.82[EUR][1000 genomes]
rs4508859	0.82[EUR][1000 genomes]
rs55818428	0.82[ASN][1000 genomes]
rs6447546	0.82[EUR][1000 genomes]
rs73249609	0.82[ASN][1000 genomes]
rs7674333	0.85[EUR][1000 genomes]
rs7683663	0.82[EUR][1000 genomes]
rs7687439	0.85[EUR][1000 genomes]
rs9291305	0.84[EUR][1000 genomes]
rs9917915	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47337600-47342200	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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