Variant report

Variant	rs17461709
Chromosome Location	chr4:47347503-47347504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10000697	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs10023965	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs10440176	0.81[CEU][hapmap]
rs11731871	0.85[CEU][hapmap]
rs11929757	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap]
rs12331018	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs12503495	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13104400	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs13108343	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13114985	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13129278	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34098612	0.86[EUR][1000 genomes]
rs34282295	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34429982	0.86[EUR][1000 genomes]
rs35276546	0.82[ASN][1000 genomes]
rs3822112	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs4235146	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4261959	0.85[CEU][hapmap]
rs4261968	0.85[CEU][hapmap]
rs4302438	0.84[CEU][hapmap]
rs4386575	0.88[CEU][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs4495018	0.84[CEU][hapmap];0.85[TSI][hapmap]
rs4508859	1.00[JPT][hapmap]
rs4518219	1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs4577548	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs4588429	0.88[CEU][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs4597807	0.83[CEU][hapmap]
rs4602475	0.86[EUR][1000 genomes]
rs55818428	0.82[ASN][1000 genomes]
rs55825318	0.84[EUR][1000 genomes]
rs56336915	0.86[EUR][1000 genomes]
rs62297800	0.85[EUR][1000 genomes]
rs6447546	0.85[CEU][hapmap];0.83[TSI][hapmap]
rs6820498	0.84[EUR][1000 genomes]
rs6831556	0.88[CEU][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs6833189	0.86[EUR][1000 genomes]
rs6837135	0.86[EUR][1000 genomes]
rs73249609	0.82[ASN][1000 genomes]
rs7664909	0.86[EUR][1000 genomes]
rs7665508	0.88[CEU][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs7666958	0.86[EUR][1000 genomes]
rs7674333	0.87[CEU][hapmap]
rs7687439	0.84[CEU][hapmap]
rs9291305	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs9683412	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9917915	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17461709	CORIN	cis	parietal	SCAN
rs17461709	TXK	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47345400-47348400	Weak transcription	Osteobl	bone

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