Variant report

Variant	rs11929757
Chromosome Location	chr4:47308849-47308850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10000697	0.88[CEU][hapmap];0.87[TSI][hapmap]
rs10023965	0.88[CEU][hapmap];0.87[TSI][hapmap]
rs10440176	0.86[CEU][hapmap]
rs11731871	0.88[CEU][hapmap]
rs12331018	0.88[CEU][hapmap];0.87[TSI][hapmap]
rs12503495	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13108343	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13114985	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13129278	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17461709	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2078610	1.00[CHD][hapmap];0.82[GIH][hapmap]
rs34282295	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35276546	0.82[ASN][1000 genomes]
rs3822112	0.85[CEU][hapmap];0.87[TSI][hapmap]
rs4235146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4261959	0.88[CEU][hapmap]
rs4261968	0.88[CEU][hapmap]
rs4302438	0.88[CEU][hapmap]
rs4386575	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs4495018	0.88[CEU][hapmap];0.89[TSI][hapmap]
rs4508859	1.00[JPT][hapmap]
rs4518219	1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap]
rs4577548	0.81[CEU][hapmap]
rs4588429	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs55818428	0.82[ASN][1000 genomes]
rs6447546	0.88[CEU][hapmap];0.89[TSI][hapmap]
rs6831556	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs73249609	0.82[ASN][1000 genomes]
rs733873	0.86[GIH][hapmap]
rs7665508	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs7674333	0.91[CEU][hapmap]
rs7687439	0.88[CEU][hapmap]
rs9291305	0.88[CEU][hapmap];0.87[TSI][hapmap]
rs9683412	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9917915	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879004	chr4:47234200-47322190	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11929757	CORIN	cis	parietal	SCAN
rs11929757	TXK	cis	parietal	SCAN
rs11929757	YIPF7	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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