Variant report

Variant	rs4588429
Chromosome Location	chr4:47350872-47350873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10000697	0.96[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap]
rs10023965	0.96[CEU][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs10440176	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11731871	0.96[CEU][hapmap]
rs11737184	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11929757	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs12331018	0.96[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap]
rs12500794	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12503495	0.84[CEU][hapmap]
rs13104400	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13108343	0.84[CEU][hapmap]
rs17461709	0.88[CEU][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs34098612	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34429982	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3822112	0.92[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap]
rs4235146	0.84[CEU][hapmap]
rs4261959	0.96[CEU][hapmap]
rs4261968	0.96[CEU][hapmap]
rs4302438	0.96[CEU][hapmap]
rs4386575	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4495018	0.96[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4508859	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4577548	0.96[CEU][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4597807	0.95[CEU][hapmap];0.82[YRI][hapmap]
rs4599390	0.85[CEU][hapmap]
rs4602475	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55825318	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56336915	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62297800	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6447546	0.96[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6820498	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6831556	1.00[CEU][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6833189	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6837135	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7664909	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7665508	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7666958	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674333	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7683663	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7683676	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7687439	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9291305	0.96[CEU][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9917915	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4588429	YIPF7	cis	parietal	SCAN
rs4588429	TXK	cis	parietal	SCAN
rs4588429	CORIN	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47347800-47351000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:47349600-47351200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:47350800-47351800	Enhancers	NH-A	brain
4	chr4:47350800-47352000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:47350800-47352000	Enhancers	HSMM	muscle
6	chr4:47350800-47352000	Enhancers	Osteobl	bone

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