Variant report

Variant	rs34282556
Chromosome Location	chr6:54471097-54471098
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs35749125	1.00[EUR][1000 genomes]
rs35900434	0.90[EUR][1000 genomes]
rs58221645	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71558893	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71558894	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3344278	chr6:54468818-54471366	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
3	esv2584101	chr6:54469531-54471158	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54465800-54481800	Weak transcription	Aorta	Aorta
2	chr6:54467800-54479200	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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