Variant report
| Variant | rs34285886 |
|---|---|
| Chromosome Location | chr12:57302520-57302521 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:57302260..57303849-chr12:57325166..57326787,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10783808 | 0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10876950 | 0.83[ASN][1000 genomes] |
| rs12812221 | 0.82[ASN][1000 genomes] |
| rs12823784 | 0.92[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs17119173 | 0.84[ASN][1000 genomes] |
| rs34263825 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs34465459 | 0.90[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs35944841 | 0.83[ASN][1000 genomes] |
| rs4259865 | 0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4468384 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4612852 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4759040 | 0.86[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4759265 | 0.86[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs58911887 | 0.92[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs67377945 | 0.83[ASN][1000 genomes] |
| rs7304127 | 0.83[ASN][1000 genomes] |
| rs7358569 | 0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7957145 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040850 | chr12:57055011-57679209 | Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 181 gene(s) | inside rSNPs | diseases |
| 2 | nsv899107 | chr12:57293436-57321212 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:57300600-57303200 | Weak transcription | Liver | Liver |
