Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10783808	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10876950	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12812221	1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs12823784	0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17119173	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1872436	0.87[JPT][hapmap]
rs2629413	0.82[JPT][hapmap]
rs34263825	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34285886	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34465459	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35944841	0.81[ASN][1000 genomes]
rs4259865	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4468384	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4612852	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4759040	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4759265	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58911887	0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67377945	0.81[ASN][1000 genomes]
rs719749	0.88[JPT][hapmap]
rs719750	0.82[JPT][hapmap]
rs7304127	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs7358569	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7970701	0.87[JPT][hapmap]
rs840160	0.87[JPT][hapmap]
rs840162	0.88[JPT][hapmap]
rs840163	0.87[JPT][hapmap]
rs863459	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
2	nsv899107	chr12:57293436-57321212	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57300600-57303200	Weak transcription	Liver	Liver
2	chr12:57302000-57302400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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