Variant report

Variant	rs34288920
Chromosome Location	chr10:99083483-99083484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1088187	0.83[EUR][1000 genomes]
rs11189121	0.86[EUR][1000 genomes]
rs12240590	0.86[EUR][1000 genomes]
rs1253386	0.83[EUR][1000 genomes]
rs1253396	0.87[EUR][1000 genomes]
rs1253397	0.87[EUR][1000 genomes]
rs1253400	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1253401	0.87[EUR][1000 genomes]
rs12769073	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12782676	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2861877	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2861879	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2992773	0.84[EUR][1000 genomes]
rs34115590	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34624597	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36098270	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4917765	0.97[EUR][1000 genomes]
rs56189004	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61569149	0.90[EUR][1000 genomes]
rs61861842	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61861843	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61861844	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61861849	0.86[EUR][1000 genomes]
rs61861850	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070902	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7074896	0.86[EUR][1000 genomes]
rs7089634	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7091162	0.86[EUR][1000 genomes]
rs7101333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915926	0.88[EUR][1000 genomes]
rs793519	0.83[EUR][1000 genomes]
rs793522	0.83[EUR][1000 genomes]
rs793531	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045553	chr10:98944397-99122203	Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv540750	chr10:98944397-99122203	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv895914	chr10:99006083-99131676	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv825533	chr10:99070570-99115599	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv825534	chr10:99081505-99115599	Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99080400-99085200	Weak transcription	A549	lung
2	chr10:99080600-99091200	Weak transcription	HMEC	breast
3	chr10:99080800-99089800	Weak transcription	Dnd41	blood
4	chr10:99081200-99088000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:99081200-99091200	Weak transcription	Psoas Muscle	Psoas
6	chr10:99081200-99092600	Weak transcription	Aorta	Aorta
7	chr10:99081400-99086800	Weak transcription	Pancreas	Pancrea
8	chr10:99081400-99087400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:99081400-99088200	Weak transcription	Lung	lung
10	chr10:99081400-99088400	Weak transcription	Right Atrium	heart
11	chr10:99081400-99088800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:99081400-99089000	Weak transcription	Ovary	ovary
13	chr10:99081400-99089800	Weak transcription	Gastric	stomach
14	chr10:99081600-99083600	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
15	chr10:99081600-99083800	Enhancers	Liver	Liver
16	chr10:99081600-99087200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:99081600-99087800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:99081600-99088400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr10:99081600-99089000	Weak transcription	Esophagus	oesophagus
20	chr10:99081600-99091000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr10:99081600-99091600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:99081600-99091600	Weak transcription	Fetal Kidney	kidney
23	chr10:99081600-99091600	Weak transcription	HSMMtube	muscle
24	chr10:99081800-99085200	Weak transcription	HepG2	liver
25	chr10:99081800-99085800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:99081800-99087800	Weak transcription	Left Ventricle	heart
27	chr10:99081800-99087800	Weak transcription	Thymus	Thymus
28	chr10:99081800-99088400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr10:99081800-99088600	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:99081800-99091000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:99081800-99091000	Weak transcription	HUVEC	blood vessel
32	chr10:99081800-99091200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:99081800-99091200	Weak transcription	Small Intestine	intestine
34	chr10:99081800-99091200	Weak transcription	HSMM	muscle
35	chr10:99081800-99091800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:99081800-99092000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr10:99081800-99092600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:99082000-99087800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr10:99082000-99088400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr10:99082000-99089800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr10:99082000-99089800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:99082000-99091000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr10:99082000-99091000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr10:99082000-99091200	Weak transcription	Placenta	Placenta
45	chr10:99082200-99085400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:99082200-99085400	Weak transcription	K562	blood
47	chr10:99082200-99086600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr10:99082200-99087200	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr10:99082200-99087200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr10:99082200-99087200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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