Variant report

Variant	rs61861849
Chromosome Location	chr10:99073083-99073084
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr10:99072727-99073097	K562	blood:	n/a	n/a
2	MEF2A	chr10:99072710-99073137	K562	blood:	n/a	n/a
3	GATA1	chr10:99072690-99073175	PBDE	blood:	n/a	chr10:99072906-99072923
4	MAFK	chr10:99072770-99073087	HepG2	liver:	n/a	chr10:99072918-99072933 chr10:99072922-99072933
5	POLR2A	chr10:99072705-99073113	K562	blood:	n/a	n/a
6	TEAD4	chr10:99072712-99073103	K562	blood:	n/a	n/a
7	MAFF	chr10:99072739-99073100	K562	blood:	n/a	chr10:99072917-99072935
8	TAL1	chr10:99072702-99073115	K562	blood:	n/a	chr10:99072905-99072923
9	CBX3	chr10:99072559-99073086	K562	blood:	n/a	n/a
10	ZNF384	chr10:99072993-99073331	K562	blood:	n/a	n/a
11	GATA2	chr10:99072649-99073155	K562	blood:	n/a	chr10:99072906-99072923

Variant related genes	Relation type
ENSG00000237169	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1088187	0.81[EUR][1000 genomes]
rs11189121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12240590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1253386	0.81[EUR][1000 genomes]
rs1253387	0.88[EUR][1000 genomes]
rs1253396	0.85[EUR][1000 genomes]
rs1253397	0.85[EUR][1000 genomes]
rs1253400	0.84[EUR][1000 genomes]
rs1253401	0.85[EUR][1000 genomes]
rs12769073	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782676	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1890966	0.81[EUR][1000 genomes]
rs2861877	0.86[EUR][1000 genomes]
rs2992773	0.83[EUR][1000 genomes]
rs34115590	0.86[EUR][1000 genomes]
rs34288920	0.86[EUR][1000 genomes]
rs34624597	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36098270	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4917765	0.83[EUR][1000 genomes]
rs61569149	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61861842	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61861843	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61861844	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61861850	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7074896	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7091162	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101333	0.86[EUR][1000 genomes]
rs7915926	0.86[EUR][1000 genomes]
rs793519	0.82[EUR][1000 genomes]
rs793520	0.88[EUR][1000 genomes]
rs793522	0.81[EUR][1000 genomes]
rs793524	0.88[EUR][1000 genomes]
rs793531	0.83[EUR][1000 genomes]
rs796980	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1041614	chr10:98928281-99083056	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1045553	chr10:98944397-99122203	Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv540750	chr10:98944397-99122203	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv895914	chr10:99006083-99131676	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv825533	chr10:99070570-99115599	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99069000-99073200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr10:99069000-99073600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr10:99069800-99075400	Weak transcription	HepG2	liver
4	chr10:99072800-99073200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr10:99072800-99073400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:99073000-99073400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:99073000-99075400	Weak transcription	K562	blood

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