Variant report
| Variant | rs342916 |
|---|---|
| Chromosome Location | chr3:146288240-146288241 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1507361 | 0.94[ASN][1000 genomes] |
| rs163756 | 0.87[ASN][1000 genomes] |
| rs171071 | 0.94[ASN][1000 genomes] |
| rs342887 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs342891 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs342901 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.94[ASN][1000 genomes] |
| rs342902 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs342903 | 0.94[ASN][1000 genomes] |
| rs342914 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs342915 | 0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs342922 | 0.92[ASN][1000 genomes] |
| rs342926 | 0.94[ASN][1000 genomes] |
| rs342927 | 0.94[ASN][1000 genomes] |
| rs342928 | 0.91[ASN][1000 genomes] |
| rs342929 | 0.92[ASN][1000 genomes] |
| rs342930 | 0.94[ASN][1000 genomes] |
| rs343282 | 0.93[ASN][1000 genomes] |
| rs343289 | 0.94[ASN][1000 genomes] |
| rs343290 | 0.94[ASN][1000 genomes] |
| rs343338 | 0.92[ASN][1000 genomes] |
| rs423266 | 0.85[ASN][1000 genomes] |
| rs439109 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014493 | chr3:146255594-146288414 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | n/a |
| 2 | nsv432489 | chr3:146271370-146323969 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv877623 | chr3:146278616-146319368 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv508253 | chr3:146282620-146301477 | Weak transcription ZNF genes & repeats Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:146288200-146290200 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
