Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1507361	0.89[ASN][1000 genomes]
rs163756	0.93[ASN][1000 genomes]
rs171071	0.89[ASN][1000 genomes]
rs342887	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.89[ASN][1000 genomes]
rs342891	0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs342901	0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs342902	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.89[ASN][1000 genomes]
rs342903	0.89[ASN][1000 genomes]
rs342914	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs342915	0.93[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs342916	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs342919	0.87[MEX][hapmap]
rs342920	0.87[MEX][hapmap]
rs342922	0.81[ASN][1000 genomes]
rs342926	0.89[ASN][1000 genomes]
rs342927	0.89[ASN][1000 genomes]
rs342928	0.87[ASN][1000 genomes]
rs342929	0.88[ASN][1000 genomes]
rs342930	0.89[ASN][1000 genomes]
rs343282	0.90[ASN][1000 genomes]
rs343289	0.89[ASN][1000 genomes]
rs343290	0.89[ASN][1000 genomes]
rs343338	0.91[ASN][1000 genomes]
rs375265	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs376324	0.81[AFR][1000 genomes]
rs423266	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs439109	WWTR1	cis	cerebellum	SCAN
rs439109	EIF2A	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146313400-146320600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:146316800-146321200	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:146317800-146322000	Weak transcription	Placenta Amnion	Placenta Amnion

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