Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr3:146288569-146288930	K562	blood:	n/a	n/a
2	MAFK	chr3:146288567-146288706	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
RNU6-428P	TF binding region

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs163752	0.94[ASN][1000 genomes]
rs1849163	0.88[ASN][1000 genomes]
rs342885	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs342886	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs342887	0.87[MEX][hapmap]
rs342889	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs342890	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs342900	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs342902	0.87[MEX][hapmap]
rs342904	0.94[ASN][1000 genomes]
rs342917	0.96[ASN][1000 genomes]
rs342918	0.96[ASN][1000 genomes]
rs342920	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs342921	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs342931	0.93[ASN][1000 genomes]
rs343281	0.94[ASN][1000 genomes]
rs343288	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs343291	0.94[ASN][1000 genomes]
rs343292	0.94[ASN][1000 genomes]
rs343339	0.92[ASN][1000 genomes]
rs375265	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs376324	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs406320	0.92[ASN][1000 genomes]
rs432047	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv877623	chr3:146278616-146319368	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv508253	chr3:146282620-146301477	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146288200-146290200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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