Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:145940254..145941134-chr3:146295120..146295978,3	MCF-7	breast:
2	chr3:146051922..146052597-chr3:146295303..146296107,2	MCF-7	breast:
3	chr3:145936366..145937318-chr3:146295230..146296148,3	K562	blood:
4	chr3:145783012..145783944-chr3:146295169..146296067,2	K562	blood:
5	chr3:146044616..146045587-chr3:146295200..146296047,4	MCF-7	breast:
6	chr3:146051675..146052565-chr3:146295209..146295722,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs163752	0.99[ASN][1000 genomes]
rs1849163	0.92[ASN][1000 genomes]
rs342885	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs342886	0.84[ASN][1000 genomes]
rs342889	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs342890	0.84[ASN][1000 genomes]
rs342900	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs342904	0.99[ASN][1000 genomes]
rs342917	0.96[ASN][1000 genomes]
rs342918	0.96[ASN][1000 genomes]
rs342919	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs342920	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs342921	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs343281	0.99[ASN][1000 genomes]
rs343288	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs343291	0.99[ASN][1000 genomes]
rs343292	0.99[ASN][1000 genomes]
rs343339	0.96[ASN][1000 genomes]
rs375265	0.94[ASN][1000 genomes]
rs376324	0.92[ASN][1000 genomes]
rs406320	0.96[ASN][1000 genomes]
rs432047	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv877623	chr3:146278616-146319368	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv508253	chr3:146282620-146301477	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146293800-146299800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr3:146295200-146300000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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