Variant report

Variant	rs342889
Chromosome Location	chr3:146326945-146326946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:146325301..146327425-chr3:146329382..146331006,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1507361	0.89[AMR][1000 genomes]
rs163752	0.85[ASN][1000 genomes]
rs171071	0.90[AMR][1000 genomes]
rs1849163	0.81[ASN][1000 genomes]
rs342885	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs342886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342887	0.91[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs342890	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342891	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs342900	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs342902	0.91[CEU][hapmap];0.91[AMR][1000 genomes]
rs342903	0.90[AMR][1000 genomes]
rs342904	0.85[ASN][1000 genomes]
rs342909	0.88[AFR][1000 genomes]
rs342914	0.91[CEU][hapmap];0.86[AMR][1000 genomes]
rs342917	0.83[ASN][1000 genomes]
rs342918	0.83[ASN][1000 genomes]
rs342919	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs342920	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs342921	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs342926	0.91[AMR][1000 genomes]
rs342927	0.89[AMR][1000 genomes]
rs342928	0.91[AMR][1000 genomes]
rs342929	0.91[AMR][1000 genomes]
rs342930	0.90[AMR][1000 genomes]
rs342931	0.84[ASN][1000 genomes]
rs343281	0.85[ASN][1000 genomes]
rs343282	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs343288	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs343289	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs343290	0.90[AMR][1000 genomes]
rs343291	0.85[ASN][1000 genomes]
rs343292	0.85[ASN][1000 genomes]
rs343338	0.90[AMR][1000 genomes]
rs343339	0.86[ASN][1000 genomes]
rs375265	0.90[ASN][1000 genomes]
rs376324	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs406320	0.85[ASN][1000 genomes]
rs432047	0.87[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146323400-146328600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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