Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs163752	0.95[ASN][1000 genomes]
rs1849163	0.90[ASN][1000 genomes]
rs342885	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs342886	0.90[ASN][1000 genomes]
rs342889	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs342890	0.90[ASN][1000 genomes]
rs342900	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs342904	0.95[ASN][1000 genomes]
rs342917	0.92[ASN][1000 genomes]
rs342918	0.92[ASN][1000 genomes]
rs342919	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs342920	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs342921	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs342931	0.94[ASN][1000 genomes]
rs343281	0.95[ASN][1000 genomes]
rs343288	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs343291	0.95[ASN][1000 genomes]
rs343292	0.95[ASN][1000 genomes]
rs343339	0.96[ASN][1000 genomes]
rs376324	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs406320	0.94[ASN][1000 genomes]
rs423266	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs432047	0.96[ASN][1000 genomes]
rs439109	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv877623	chr3:146278616-146319368	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3443280	chr3:146317812-146320210	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs375265	EIF2A	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146313400-146320600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:146316800-146321200	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:146317800-146322000	Weak transcription	Placenta Amnion	Placenta Amnion

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