Variant report

Variant	rs34292318
Chromosome Location	chr14:31743215-31743216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10139078	1.00[EUR][1000 genomes]
rs10143393	1.00[EUR][1000 genomes]
rs17097907	1.00[EUR][1000 genomes]
rs73253154	1.00[EUR][1000 genomes]
rs73253156	1.00[EUR][1000 genomes]
rs73253162	1.00[EUR][1000 genomes]
rs73257353	1.00[EUR][1000 genomes]
rs73257374	1.00[EUR][1000 genomes]
rs73259319	1.00[EUR][1000 genomes]
rs73259359	1.00[EUR][1000 genomes]
rs8005726	1.00[EUR][1000 genomes]
rs8013552	1.00[EUR][1000 genomes]
rs8020093	1.00[EUR][1000 genomes]
rs8021557	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31735400-31743400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr14:31735600-31743400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:31740000-31746200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:31740000-31746200	Weak transcription	Esophagus	oesophagus
5	chr14:31740800-31743800	Enhancers	HepG2	liver
6	chr14:31741800-31743400	Weak transcription	Fetal Intestine Small	intestine
7	chr14:31742000-31743400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:31742000-31743600	Enhancers	GM12878-XiMat	blood
9	chr14:31742600-31743800	Enhancers	NHDF-Ad	bronchial
10	chr14:31742600-31744000	Enhancers	HUVEC	blood vessel
11	chr14:31742800-31743800	Enhancers	Hela-S3	cervix
12	chr14:31743200-31743600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:31743200-31743600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:31743200-31743600	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr14:31743200-31743600	Enhancers	Rectal Smooth Muscle	rectum
16	chr14:31743200-31743600	Enhancers	Stomach Mucosa	stomach
17	chr14:31743200-31743600	Enhancers	NHEK	skin
18	chr14:31743200-31743600	Enhancers	NHLF	lung
19	chr14:31743200-31743600	Enhancers	Osteobl	bone
20	chr14:31743200-31743800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:31743200-31743800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr14:31743200-31743800	Enhancers	HMEC	breast

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