Variant report

Variant	rs8013552
Chromosome Location	chr14:31744740-31744741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10139078	1.00[EUR][1000 genomes]
rs10143393	1.00[EUR][1000 genomes]
rs10149648	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12586979	0.87[ASN][1000 genomes]
rs17097907	1.00[EUR][1000 genomes]
rs34292318	1.00[EUR][1000 genomes]
rs73253154	1.00[EUR][1000 genomes]
rs73253156	1.00[EUR][1000 genomes]
rs73253162	1.00[EUR][1000 genomes]
rs73257353	1.00[EUR][1000 genomes]
rs73257374	1.00[EUR][1000 genomes]
rs73259319	1.00[EUR][1000 genomes]
rs73259359	1.00[EUR][1000 genomes]
rs8005726	1.00[EUR][1000 genomes]
rs8020093	1.00[EUR][1000 genomes]
rs8021557	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31740000-31746200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:31740000-31746200	Weak transcription	Esophagus	oesophagus
3	chr14:31743600-31745000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:31743600-31753000	Weak transcription	Osteobl	bone
5	chr14:31744200-31746800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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