Variant report

Variant	rs34299394
Chromosome Location	chr9:98344706-98344707
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10118174	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10120432	0.82[EUR][1000 genomes]
rs10122740	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10981328	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12339113	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13298553	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2405060	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2897052	0.80[EUR][1000 genomes]
rs34777564	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35474521	0.84[EUR][1000 genomes]
rs35513072	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4335262	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55672769	0.80[EUR][1000 genomes]
rs55957307	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7862599	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430083	chr9:98204245-98445645	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1041997	chr9:98322355-98442175	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv540176	chr9:98322355-98442175	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98332600-98350000	Weak transcription	Right Atrium	heart
2	chr9:98342200-98344800	Enhancers	Fetal Intestine Large	intestine
3	chr9:98343000-98345000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr9:98343000-98347000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:98343200-98344800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr9:98343400-98345000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:98343600-98344800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:98343800-98344800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr9:98344000-98344800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr9:98344000-98345800	Weak transcription	Fetal Kidney	kidney
11	chr9:98344200-98344800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:98344400-98344800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr9:98344400-98344800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr9:98344400-98344800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr9:98344400-98344800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:98344400-98346400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:98344400-98346400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:98344400-98346400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:98344600-98344800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:98344600-98344800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr9:98344600-98346000	Weak transcription	Fetal Stomach	stomach
22	chr9:98344600-98346200	Weak transcription	Fetal Lung	lung
23	chr9:98344600-98346400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:98344600-98346600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:98344600-98346800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links