Variant report

Variant	rs55957307
Chromosome Location	chr9:98337392-98337393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10118174	0.84[EUR][1000 genomes]
rs10981328	0.84[EUR][1000 genomes]
rs12339113	0.84[EUR][1000 genomes]
rs13298553	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2405060	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28675274	0.81[EUR][1000 genomes]
rs2897052	0.92[EUR][1000 genomes]
rs34299394	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34777564	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35513072	0.84[EUR][1000 genomes]
rs4335262	0.84[EUR][1000 genomes]
rs55672769	0.92[EUR][1000 genomes]
rs6477853	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv430083	chr9:98204245-98445645	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1041997	chr9:98322355-98442175	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540176	chr9:98322355-98442175	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv2547119	chr9:98336055-98337442	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98332600-98350000	Weak transcription	Right Atrium	heart
2	chr9:98333800-98337400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:98335000-98338000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:98336400-98338000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:98337000-98337400	Flanking Active TSS	A549	lung
6	chr9:98337000-98337600	Bivalent Enhancer	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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