Variant report
| Variant | rs34307542 |
|---|---|
| Chromosome Location | chr8:87645199-87645200 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:87643326..87646247-chr8:87673858..87676137,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000233915 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs13253975 | 0.84[EUR][1000 genomes] |
| rs13259390 | 0.84[EUR][1000 genomes] |
| rs13267795 | 0.84[EUR][1000 genomes] |
| rs13275295 | 0.84[EUR][1000 genomes] |
| rs35680426 | 0.84[EUR][1000 genomes] |
| rs3735969 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3779795 | 0.84[EUR][1000 genomes] |
| rs3779798 | 0.84[EUR][1000 genomes] |
| rs55901396 | 0.89[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs56004121 | 0.84[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs56254697 | 0.89[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs58714138 | 0.84[EUR][1000 genomes] |
| rs66509922 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67463707 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67858232 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6998936 | 0.84[EUR][1000 genomes] |
| rs72692238 | 0.89[AMR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023510 | chr8:87429001-87874948 | Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv891150 | chr8:87588519-87652115 | Weak transcription Enhancers Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv818641 | chr8:87643741-87658739 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
