Variant report

Variant	rs13275295
Chromosome Location	chr8:87675469-87675470
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr8:87675358-87675677	SH-SY5Y	brain:	n/a	chr8:87675510-87675521 chr8:87675510-87675526 chr8:87675507-87675528 chr8:87675514-87675521 chr8:87675514-87675521 chr8:87675552-87675563 chr8:87675514-87675521
2	GATA3	chr8:87675083-87675744	SH-SY5Y	brain:	n/a	chr8:87675510-87675521 chr8:87675510-87675526 chr8:87675507-87675528 chr8:87675514-87675521 chr8:87675514-87675521 chr8:87675552-87675563 chr8:87675514-87675521

Variant related genes	Relation type
GOLGA2P1	TF binding region
UBE2Q2P10	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13253975	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13259390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13260144	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13265557	1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs13267795	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13278533	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13278624	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1441247	1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs34307542	0.84[EUR][1000 genomes]
rs35680426	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3735966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs3735969	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs3779791	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3779792	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs3779795	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3779798	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4961207	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs58714138	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66509922	0.84[EUR][1000 genomes]
rs67463707	0.84[EUR][1000 genomes]
rs67858232	0.84[EUR][1000 genomes]
rs6991672	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs6998936	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links