Variant report

Variant	rs3779791
Chromosome Location	chr8:87676710-87676711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13253975	0.97[ASN][1000 genomes]
rs13259390	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13260144	1.00[JPT][hapmap]
rs13265557	1.00[JPT][hapmap]
rs13267795	0.97[ASN][1000 genomes]
rs13275295	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13278533	1.00[JPT][hapmap]
rs13278624	1.00[JPT][hapmap]
rs1441247	1.00[JPT][hapmap]
rs35680426	0.97[ASN][1000 genomes]
rs3735966	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3735969	1.00[JPT][hapmap]
rs3779792	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3779795	0.97[ASN][1000 genomes]
rs3779798	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4961207	1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58714138	1.00[ASN][1000 genomes]
rs6991672	1.00[JPT][hapmap]
rs6998936	1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3779791	C8orf46	trans	parietal	SCAN
rs3779791	RORB	trans	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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