Variant report
| Variant | rs4961207 |
|---|---|
| Chromosome Location | chr8:87672651-87672652 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:87668814..87670322-chr8:87672192..87674304,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000221137 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs13253975 | 1.00[ASN][1000 genomes] |
| rs13259390 | 1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs13260144 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13265557 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13267795 | 1.00[ASN][1000 genomes] |
| rs13275295 | 1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs13278533 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13278624 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1441247 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs35680426 | 1.00[ASN][1000 genomes] |
| rs3735966 | 1.00[JPT][hapmap] |
| rs3735969 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs3779791 | 1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.88[TSI][hapmap] |
| rs3779792 | 1.00[JPT][hapmap] |
| rs3779795 | 1.00[ASN][1000 genomes] |
| rs3779798 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs58714138 | 0.97[ASN][1000 genomes] |
| rs6991672 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6998936 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023510 | chr8:87429001-87874948 | Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv981963 | chr8:87671867-87673955 | Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
