Variant report

Variant	rs34312910
Chromosome Location	chr11:36656011-36656012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36649743..36651991-chr11:36654545..36656846,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10836578	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836586	0.98[EUR][1000 genomes]
rs10836587	0.98[EUR][1000 genomes]
rs10836589	0.98[EUR][1000 genomes]
rs11033757	1.00[ASN][1000 genomes]
rs1391544	0.98[EUR][1000 genomes]
rs1391545	0.93[EUR][1000 genomes]
rs1518741	0.96[EUR][1000 genomes]
rs1969325	0.96[EUR][1000 genomes]
rs2047444	0.98[EUR][1000 genomes]
rs332435	0.98[EUR][1000 genomes]
rs332440	0.98[EUR][1000 genomes]
rs332442	0.98[EUR][1000 genomes]
rs34314271	0.98[EUR][1000 genomes]
rs60420187	0.96[EUR][1000 genomes]
rs7123148	1.00[ASN][1000 genomes]
rs72941528	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72941597	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1850719	chr11:36616867-36657272	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv467792	chr11:36624187-36898373	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv554005	chr11:36624187-36898373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv467793	chr11:36632515-37171833	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv554006	chr11:36632515-37171833	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv518415	chr11:36644076-36661723	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36616600-36657000	Weak transcription	Left Ventricle	heart
2	chr11:36630000-36678800	Weak transcription	Brain Angular Gyrus	brain
3	chr11:36630600-36661000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:36630600-36682000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:36640800-36669400	Weak transcription	Aorta	Aorta
6	chr11:36641400-36669400	Weak transcription	Adipose Nuclei	Adipose
7	chr11:36641400-36669600	Weak transcription	Ovary	ovary
8	chr11:36641400-36681000	Weak transcription	Primary T cells from cord blood	blood
9	chr11:36641600-36660400	Weak transcription	Fetal Stomach	stomach
10	chr11:36642000-36681000	Weak transcription	Fetal Kidney	kidney
11	chr11:36642200-36669600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:36646400-36677000	Weak transcription	Lung	lung
13	chr11:36647600-36661200	Weak transcription	Pancreas	Pancrea
14	chr11:36648600-36661000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr11:36648600-36681400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:36648800-36680600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:36649200-36656600	Weak transcription	Fetal Heart	heart
18	chr11:36649400-36669400	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:36650600-36687000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:36650800-36682600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:36651000-36670000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:36651000-36671400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:36651000-36684000	Weak transcription	HSMMtube	muscle
24	chr11:36653600-36660200	Weak transcription	Fetal Lung	lung
25	chr11:36653600-36661000	Weak transcription	Fetal Thymus	thymus
26	chr11:36653600-36663400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:36653600-36669800	Weak transcription	Liver	Liver
28	chr11:36653600-36680800	Weak transcription	Brain Anterior Caudate	brain
29	chr11:36653800-36656200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:36653800-36669600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:36653800-36684400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr11:36654000-36658000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:36654800-36657200	Enhancers	Colon Smooth Muscle	Colon
34	chr11:36654800-36669600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr11:36655000-36658800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:36655200-36658200	Strong transcription	Primary hematopoietic stem cells	blood
37	chr11:36655200-36658600	Weak transcription	Fetal Brain Male	brain
38	chr11:36656000-36656800	Strong transcription	Psoas Muscle	Psoas
39	chr11:36656000-36657800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:36656000-36659000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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